Crabsign,
1. It is a waste of time measuring the outside of the chuck, they can be almost any shape.
2. It is a waste of time measuring the outside jaws as you have them, they can be in almost any position without being clamped to something. Put a large bar in there and clock off the bar near to the chuck.
3. I would suggest you put your inside jaws into the chuck. Make sure you have the right jaw in the right slot, they should be numbered, and insert them one after another starting with #1. THEN put a piece of ground stock, or a milling cutter into the jaws, and clock off that. Only then should you mention the results.
Anything up to 0.003" (3 thou) runout is perfectly acceptable on a standard sort of 3 jaw.
Bogs